EasyIndex

Whole mouse brain before delipidation, after delipidation, and after optical clearing including refractive index matching

Refractive index matching, simplified

Delipidation and refractive index (RI) -matching allow light to pass unhindered through the sample during microscopy. In effect, tissue clearing refers to the combined process of delipidation and optical clearing via index matching.

Delipidated tissues will appear translucent, while cleared and RI-matched tissues will appear transparent. Our preformulated EasyIndex solution prepares samples for sharp, informative volumetric imaging with light sheet microscopes like SmartSPIM and MegaSPIM.

Tissue Clearing - Highlighted pipeline icon
EasyIndex bottle

Optically clear intact tissues and sections

The 500-mL EasyIndex bottle can be used for up to 12 whole mouse brains or similarly sized intact samples, or ~200 1 mm-thick sections. We provide RI = 1.52 standard solutions with RI = 1.46 solution available on request.

EasyIndex is ideal for index-matching multiple tissue types, immunolabeled tissues, and specimens cleared with aqueous methods like SHIELD or CLARITY.

Recent publications citing EasyIndex

A queen odour mediates reproductive suppression in a eusocial mammal

Mohammed A. Khallaf, Daniel W. Hart, Wenhan Luo, Firdevs Murad, Felipe Cybis Pereira, Daniel Mendez-Aranda, Nicole Hagenah, Alice Rossi, Valérie Bégay, Jan Okrouhlík, Dietmar Krautwurst, Mungo Kisinza Ngalameno, Andre Ganswindt, Alison J. Barker, Radim Šumbera, Markus Knaden, Sophie Pezet, Andrew Woehler, Bill S. Hansson, Nigel C. Bennett & Gary R. Lewin

Journal:
Nature
Publication Date:
Research Area:
Neural Activity
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, SmartBatch+, Passive Clearing Kit, SmartSPIM, CRO Services
Whole-Brain Biodistribution of AAV2, AAV8, and AAV-B10 After Unilateral Intracerebroventricular Injection

Dezhuang Ye, Abhinav Kayithi, Jinyun Yuan, Isaac Wang, Tianqi Xu, Marc Boisvert, Marie-Eve Paquet, Hong Chen

Journal:
Molecular Therapy Advances
Publication Date:
Research Area:
Biodistribution
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear
Developmental molecular signatures define de novo cortico-brainstem circuit for skilled forelimb movement

Julia Kaiser, Payal Patel, Sam Fedde, Alexander Lammers, Matthew Kenwood, Asim Iqbal, Mark P. Goldberg, Vibhu Sahni

Journal:
Nature Communications
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services

Further reading