EasyIndex

Whole mouse brain before delipidation, after delipidation, and after optical clearing including refractive index matching

Refractive index matching, simplified

Delipidation and refractive index (RI) -matching allow light to pass unhindered through the sample during microscopy. In effect, tissue clearing refers to the combined process of delipidation and optical clearing via index matching.

Delipidated tissues will appear translucent, while cleared and RI-matched tissues will appear transparent. Our preformulated EasyIndex solution prepares samples for sharp, informative volumetric imaging with light sheet microscopes like SmartSPIM and MegaSPIM.

Tissue Clearing - Highlighted pipeline icon
EasyIndex bottle

Optically clear intact tissues and sections

The 500-mL EasyIndex bottle can be used for up to 12 whole mouse brains or similarly sized intact samples, or ~200 1 mm-thick sections. We provide RI = 1.52 standard solutions with RI = 1.46 solution available on request.

EasyIndex is ideal for index-matching multiple tissue types, immunolabeled tissues, and specimens cleared with aqueous methods like SHIELD or CLARITY.

Recent publications citing EasyIndex

An anatomical map of squid lateral lines

Haoming Wang, Carsten Wolff, Nicolas Pintozzi, Anna-Maria Petriv, Brian M. McDermott Jr.

Journal:
Current Biology
Publication Date:
Products Cited:
SHIELD, EasyIndex, SmartBatch+, MegaSPIM, Radiant, SeTau Secondary
Topographic structure and function of locus coeruleus noradrenaline neurons

Zhixiao Su, Polina Kosillo, Kanghoon Jung, Shuonan Chen, Mathew T. Summers, Alex Piet, Han Hou, Kenta M. Hagihara, Drew Friedmann, Olivia Ho-Shing, Matthew I. Becker, Thomas Chartrand, Xinxin Yin, Peter Grotz, Ella Hilton-VanOsdall, Margaret Lee, Rajvi Javeri, Samantha L. Tuggle, Naveen Ouellette, Holly Myers, Judith Baka, Camilo Laiton, Kaelin Wulf, John Rohde, Alessio P. Buccino, Cameron Arshadi, Di Wang, Sharmishtaa Seshamani, Sonya Vasquez, Carolyn M. Eng, Douglas R. Ollerenshaw, Nick Dee, Tamara Casper, Windy Ho, Matthew Jungert, Atlas Jordan, Elliot Phillips, Anish Bhaswanth Chakka, Kamiliam Nasirova, Krista Blake, Audrey McCutcheon, Megan Koch, Maria Camila Vergara, Kimberly A. Smith, Tim Jarsky, Nicholas Lusk, Mara C. P. Rue, Xiaoyin Chen, Joshua H. Siegle, Adam K. Glaser, Brian R. Lee, Karel Svoboda, Yoh Isogai, Jayaram V. Chandrashekar & Jeremiah Y. Cohen

Journal:
Nature
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
EasyIndex, SmartBatch+, SmartSPIM
A queen odour mediates reproductive suppression in a eusocial mammal

Mohammed A. Khallaf, Daniel W. Hart, Wenhan Luo, Firdevs Murad, Felipe Cybis Pereira, Daniel Mendez-Aranda, Nicole Hagenah, Alice Rossi, Valérie Bégay, Jan Okrouhlík, Dietmar Krautwurst, Mungo Kisinza Ngalameno, Andre Ganswindt, Alison J. Barker, Radim Šumbera, Markus Knaden, Sophie Pezet, Andrew Woehler, Bill S. Hansson, Nigel C. Bennett & Gary R. Lewin

Journal:
Nature
Publication Date:
Research Area:
Neural Activity
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, SmartBatch+, Passive Clearing Kit, SmartSPIM, CRO Services

Further reading