EasyIndex

Whole mouse brain before delipidation, after delipidation, and after optical clearing including refractive index matching

Refractive index matching, simplified

Delipidation and refractive index (RI) -matching allow light to pass unhindered through the sample during microscopy. In effect, tissue clearing refers to the combined process of delipidation and optical clearing via index matching.

Delipidated tissues will appear translucent, while cleared and RI-matched tissues will appear transparent. Our preformulated EasyIndex solution prepares samples for sharp, informative volumetric imaging with light sheet microscopes like SmartSPIM and MegaSPIM.

Tissue Clearing - Highlighted pipeline icon
EasyIndex bottle

Optically clear intact tissues and sections

The 500-mL EasyIndex bottle can be used for up to 12 whole mouse brains or similarly sized intact samples, or ~200 1 mm-thick sections. We provide RI = 1.52 standard solutions with RI = 1.46 solution available on request.

EasyIndex is ideal for index-matching multiple tissue types, immunolabeled tissues, and specimens cleared with aqueous methods like SHIELD or CLARITY.

Recent publications citing EasyIndex

Concordant transcriptional and morphological remodeling revealed by in vivo Perturb-CLEAR

Boli Wu, Sean K. Simmons, Seoyeon Kim, Jiwen Li, Masood A. Akram, Chang Sin Park, Xinhe Zheng, Iain Mendez, Sasha Patel, Alan Chau, Nadia Burciu, Pranay Dayal, Thokozile Nyasulu, Nhan Huynh, Grace S. Clarke, X. William Yang, Joshua Z. Levin, Xin Jin

Journal:
bioRxiv
Publication Date:
Research Area:
Neurodevelopmental Disorders
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, Passive Clearing Kit, SmartSPIM
Distinct neurogenic pathways shape the diversification and mosaic organization of cortical output channels

Shreyas M. Suryanarayana, Xu An, Yongjun Qian, Shengli Zhao, Hemanth Mohan, Z. Josh Huang

Journal:
Neuron
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
The midbrain reticular formation in contextual control of perceptual decisions

Jordan R. Shaker, Jeremy N. Schroeter, Daniel Birman, Nicholas A. Steinmetz

Journal:
Neuron
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, Passive Clearing Kit, SmartSPIM

Further reading