EasyIndex

Whole mouse brain before delipidation, after delipidation, and after optical clearing including refractive index matching

Refractive index matching, simplified

Delipidation and refractive index (RI) -matching allow light to pass unhindered through the sample during microscopy. In effect, tissue clearing refers to the combined process of delipidation and optical clearing via index matching.

Delipidated tissues will appear translucent, while cleared and RI-matched tissues will appear transparent. Our preformulated EasyIndex solution prepares samples for sharp, informative volumetric imaging with light sheet microscopes like SmartSPIM and MegaSPIM.

Tissue Clearing - Highlighted pipeline icon
EasyIndex bottle

Optically clear intact tissues and sections

The 500-mL EasyIndex bottle can be used for up to 12 whole mouse brains or similarly sized intact samples, or ~200 1 mm-thick sections. We provide RI = 1.52 standard solutions with RI = 1.46 solution available on request.

EasyIndex is ideal for index-matching multiple tissue types, immunolabeled tissues, and specimens cleared with aqueous methods like SHIELD or CLARITY.

Recent publications citing EasyIndex

Mapping cellular targets of covalent cancer drugs in the entire mammalian body

Zhengyuan Pang, Verina H. Leung, Cailynn C. Wang, Ahmadreza Attarpour, Anthony Rinaldi, Hanbing Shen, Maria Dolores Moya-Garzon, Logan H. Sigua, Claire Rammel, Alexandra Selke, Christopher Glynn, Melaina Yender, Senhan Xu, Javid J. Moslehi, Peng Wu, Jonathan Z. Long, Maged Goubran, Benjamin F. Cravatt, Li Ye

Journal:
Cell
Publication Date:
Research Area:
Cancer, Biodistribution
Tissue Species:
Mouse
Tissue Type:
Whole Body
Products Cited:
EasyIndex, SmartSPIM
ARX mutation-associated interneuron defects provide insights into mechanisms underlying developmental epilepsies

Youngshin Lim, Shyam K Akula, Abigail K Myers, Connie Chen, Katherine A Rafael, Michaela G Ibach, Edwin Trevathan, Christopher A Walsh, Jeffrey A Golden, Ginam Cho

Journal:
BRAIN
Publication Date:
Research Area:
Neurodevelopmental Disorders
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartLabel, SmartSPIM, CRO Services
Disruption of Pre-Bötzinger Complex neuropeptidergic tonality controls fear and metabolic response

Sanutha Shetty, Amir Farmanbar, Pamela Toh, Ramazan Yildiz, YoungUK Jang, Samuel Duesman, Aidan Warnock, Diego Espinoza, Sarah A. Stanley, Prashant Rajbhandari, Abha K. Rajbhandari

Journal:
biorXiv
Publication Date:
Research Area:
Other
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
EasyIndex, SmartSPIM

Further reading