SmartSPIM

High speed, high resolution cleared tissue imaging

The SmartSPIM light sheet microscope captures high quality 3D data from a variety of intact cleared tissues, from whole mouse and rat brains to marmoset brain hemispheres and even entire juvenile mice.

Unlike many other light sheet microscopes, which are limited by acquisition time and imaging chamber size, SmartSPIM combines an innovative acquisition technique with a modular design to make cleared tissue imaging easy, fast, and flexible. Intuitive software and expert support makes light sheet microscopy accessible for your whole lab, not just one specialist.

Explore light sheet data from different tissue types

Uniform axial resolution across FOV

The SmartSPIM light sheet microscope leverages patented axial sweeping technology (Dean et al. 2015): illumination optics scan the beam while synchronized to the camera’s rolling shutter detection, providing homogeneous axial point spread functions (PSFz) across the entire field of view (FOV)

Left: The sample imaged without axial sweeping displays high axial resolution only at the center of the FOV, while the sample imaged with sweeping shows uniform axial resolution across the FOV.

Microglia (IBA-1, 647 nm) in cortex of a 7-month-old wild-type C57BL/6 male mouse from Taconic Biosciences, model #B6, 3.6X objective.

Customizable imaging chamber

Custom-designed imaging chamber and sample holders can accommodate a variety of tissue sizes, from organoids to rat brains, and even entire juvenile mice. With no points of contact between tissue and mounting hardware, the user can mount many sample types and sizes in different orientations.

Rapid, intuitive volumetric acquisition

Tunable imaging parameters allow for high speed volumetric imaging while maintaining quality resolution. 20 fps acquisition allows imaging of a mouse brain hemisphere or comparably sized intact sample in <30 minutes (at 1.8 µm x 1.8 µm x 4 µm voxel size).

Streamlined for efficient data collection, SmartSPIM’s acquisition software has real-time tile correction and is simple to operate, making imaging large samples a breeze.

Syto16 and vimentin in intact day 50 dorsal forebrain organoid
Syto16 (magenta) and vimentin (cyan) in a day 50 dorsal forebrain organoid from STEMCELL Technologies generated using the STEMdiff™ Dorsal Forebrain Organoid Differentiation Kit (cat. #08620), 15X objective.

Learn how SmartSPIM light sheet microscopy powers discovery

Technical specifications

More than a microscope – a complete solution

Sample preparation

Clear and label whole tissues while preserving key biomolecular information.

Light Sheet Imaging

Acquire spatially informative images with innovative microscopy techniques.

Image Analysis

Generate publication-quality data with robust analysis tools.

Speak to an imaging expert about your application

Recent publications citing the SmartSPIM light sheet microscope

A queen odour mediates reproductive suppression in a eusocial mammal

Mohammed A. Khallaf, Daniel W. Hart, Wenhan Luo, Firdevs Murad, Felipe Cybis Pereira, Daniel Mendez-Aranda, Nicole Hagenah, Alice Rossi, Valérie Bégay, Jan Okrouhlík, Dietmar Krautwurst, Mungo Kisinza Ngalameno, Andre Ganswindt, Alison J. Barker, Radim Šumbera, Markus Knaden, Sophie Pezet, Andrew Woehler, Bill S. Hansson, Nigel C. Bennett & Gary R. Lewin

Journal:
Nature
Publication Date:
Research Area:
Neural Activity
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, SmartBatch+, Passive Clearing Kit, SmartSPIM, CRO Services
Brain endothelial cells orchestrate a neuroprotective antiviral state in the CNS in response to peripheral viral pattern sensing

Tyler Lewy, Maria A. Sierra, Nastaran Pourshadi, Hans-Heinrich Hoffmann, Kenneth H. Dinnon, III, Anita Gola, Wei Wang, Hsuan-An Chen, Corrine Quirk, Haotan Zhang, Michael P. Doyle, Christopher E. Mason, Gretchen E. Diehl, Tobias M. Hohl, Elaine Fuchs, Margaret R. MacDonald, Zhuhao Wu, James E. Crowe, Jr., Charles M. Rice

Journal:
Immunity
Publication Date:
Research Area:
Infectious Disease
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SmartSPIM
The S1–insula Circuit Differentially Modulates Alcohol Drinking and Aversive Behavior in Mice

Tatiyana L. Adkins, Amanda L. Salazar, Jincy R. Little, Ellen C. Howard, Samuel W. Centanni

Journal:
Journal of Neuroscience
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SmartBatch+, SmartSPIM

Further reading

LifeCanvas Portraits: Tanya Daigle

Dr. Tanya Daigle used LifeCanvas' services to acquire 3D images of spinal motor neurons illuminated by enhancer AAV.