SmartBatch+

Electrophoretic tissue clearing & immunolabeling

Our easy-to-use system combines active tissue clearing and immunolabeling into one high-throughput device, allowing you to switch between clearing and labeling modes simply by changing buffers. SmartBatch+ is compatible with different tissue types and large intact samples.

An advance on our CLARITY tissue clearing method, Clear+ provides maximum optical transparency with no tissue expansion or contraction. In immunolabeling mode, eFLASH and patented SE technologies uniformly label whole organs. Unlike other methods like iDISCO and CUBIC, SmartBatch+ actively preserves fluorescent protein signal.

Tissue Clearing + Tissue Labeling - Highlighted pipeline icons
Mouse brain labeled with an anti-lamin B1 antibody.

Enhanced labeling for challenging targets

Radiant is a new primary labeling buffer system designed to improve antibody binding efficiency and accuracy in targets that are not well covered by standard methods. By modulating binding affinity, Radiant allows some antibodies to distribute more evenly throughout the sample, ensuring better coverage in cases like:

  • Highly abundant targets: Ideal for labeling proteins like lamin B1.
  • Complex organs: Uniform labeling in tissues such as skeletal muscle and heart.
  • Large tissues: Fully penetrates tissues from larger species like rat and marmoset.
  • Dense targets: Perfect for densely-labeled structures in applications like viral tracing.

Note: All new SmartBatch+ devices come with Radiant hardware pre-installed, and are still fully compatible with the standard buffer system. Radiant is not intended to replace the Standard buffer system for all targets – please check the validated antibody list to see which system is best for your target.

Already have a SmartBatch+? Contact us and we will install the upgrade for free.

Consistent histological data

SmartBatch+ actively clears and labels up to 12 whole mouse brains or comparably sized samples in as little as one day, and 2 whole rat brains in just 3-4 days! This provides unparalleled consistency for multiple treatment groups. Its small footprint also allows ample space for multiple devices.

High quality sample integrity for 3D imaging

SmartBatch+ combined with SHIELD tissue preservation protects fluorescent protein signal, antigenicity, and molecular and physical architecture through all tissue processing steps. Clear+ is currently the only tissue clearing technique that preserves sample morphology. This ensures your samples will produce information-rich images.

SmartBatch+ tissue clearing and labeling workflow

Fast, cost-effective tissue clearing & labeling

Use just 4-20 μg of antibody per target to label a sample the size of a whole mouse brain — up to an order of magnitude less than passive staining. Save hundreds of dollars per sample per antibody, in primary antibody alone! SmartBatch+’s turnkey design is also labor-efficient, requiring <12 mins hands-on time per sample to clear and label.

Full Pipeline Kits

Our full pipeline kits include all reagents and buffers to protect, delipidate, label and index-match your tissue samples with SmartBatch+.

Reagent Kit for Full Pipeline for 25 Mouse Brain Sized Samples

  • SHIELD 250mL Kit
  • SmartBatch+ Clear+ Kit (1x Delipidation 500mL and 1x Conduction 450mL)
  • SmartBatch+ Primary Device Buffer 6x 300mL
  • SmartBatch+ Primary Sample Buffer 3x 500mL
  • SmartBatch+ Secondary Device Buffer 6x 300mL
  • SmartBatch+ Secondary Sample Buffer 3x 500mL
  • Antibody Blocking Solution 250mL
  • EasyIndex 250mL
  • EasyIndex 500mL

Reagent Kit for Full Pipeline for 50 Mouse Brain Sized Samples

  • SHIELD 500mL Kit
  • SmartBatch+ Clear+ Kit (1x Delipidation 500mL and 1x Conduction 450mL)
  • SmartBatch+ Primary Device Buffer 12x 300mL
  • SmartBatch+ Primary Sample Buffer 6x 500mL
  • SmartBatch+ Secondary Device Buffer 12x 300mL
  • SmartBatch+ Secondary Sample Buffer 6x 500mL
  • Antibody Blocking Solution 250mL
  • EasyIndex 3x 500mL

Reagent Kit for Full Pipeline for 100 Mouse Brain Sized Samples

  • 2x SHIELD 500mL Kit
  • SmartBatch+ Clear+ Kit (2x Delipidation 500mL and 2x Conduction 450mL)
  • SmartBatch+ Primary Device Buffer 24x 300mL
  • SmartBatch+ Primary Sample Buffer 12x 500mL
  • SmartBatch+ Secondary Device Buffer 24x 300mL
  • SmartBatch+ Secondary Sample Buffer 12x 500mL
  • Antibody Blocking Solution 2x 250mL
  • EasyIndex 6x 500mL

Recent publications citing SmartBatch+

Modified AAV5 Capsid for Improved Brain Biodistribution Following Direct Injection in Preclinical Models

Sebastian N. Kieper, Elisabeth A. Spronck, Meriem Bourajjaj, Roberto D.V.S Morais, M. Leontien van der Bent, Seyda Acar Broekmans, Charlot van Rooijen, Rhodé van Westen, Giorgia Squeri, Giso Brasser, Morgane Wartel, Stijn J.H. Waaijer, C.Warner Hoornenborg, Tycho M. Hoogland, Richard Porter, Angga Kusuma

Journal:
Molecular Therapy Methods & Clinical Development
Publication Date:
Research Area:
Biodistribution
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, SmartAnalytics, CRO Services
Microglia alter sex-specific cerebellar myelination following placental hormone loss

Jacquelyn Salzbank, Helene Lacaille, Jenah Gaby, Jiaqi J. O’Reilly, Michael Kissner, Claire-Marie Vacher & Anna A. Penn

Journal:
Nature Communications
Publication Date:
Research Area:
Neurodevelopmental Disorders
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, SmartBatch+, SmartSPIM, SmartAnalytics, CRO Services
A parabrachial hub for need-state control of enduring pain

Nitsan Goldstein, Amadeus Maes, Heather N. Allen, Tyler S. Nelson, Kayla A. Kruger, Morgan Kindel, Albert T. M. Yeung, Nicholas K. Smith, Jamie R. E. Carty, Lavinia Boccia, Niklas Blank, Emily Lo, Rachael E. Villari, Ella Cho, Erin L. Marble, Michelle Awh, Yasmina Dumiaty, Melissa J. Chee, Rajesh Khanna, Christoph A. Thaiss, Bradley K. Taylor, Ann Kennedy & J. Nicholas Betley

Journal:
Nature
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services