MegaSPIM

High-resolution light sheet microscopy for a wide range of applications

MegaSPIM is a highly flexible imaging system designed to rapidly acquire high-resolution data from a variety of tissue types, including: thin sections, cleared thick sections of human or nonhuman primate organs, and arrays of smaller cleared samples such as whole rodent organs or organoids. We offer custom mounting solutions for all of these tissues and more.

After image acquisition, our streamlined post-processing pipeline facilitates destriping, deskewing, and stitching large data sets. Easily create complete 3D image sets that are ready for analysis.

Light Sheet Microscopy - Highlighted pipeline icon

High-throughput volumetric imaging, designed for speed and versatility​

Easily scan through your tissues and transform raw images into complete 3D stacks ready for viewing and analysis. MegaSPIM allows you to efficiently generate high-quality data from multiple or larger samples. 1mm-thick human brain section (see below), can be completed in just 8 hours with the 1.8X objective and a single camera.

Figure of MegaSPIM acquisition of different sample types

Detailed 3D data from human-scale samples to thin sections

TIGRE-MORF mouse brain, expressed via AAVI-Cre, imaged with MegaSPIM at 9X magnification. Shown: 200um Maximum Intensity Projection from a 1mm thick coronal section. Sample courtesy of Hongwei Dong Lab at UCLA.
E14.5 mouse embryo brains labeled for cell nuclei via YoPro1 (cyan), Olig2 (yellow), and C-Fos (magenta). Courtesy of Dr. Claire-Marie Vacher, Columbia University. Imaged on MegaSPIM at 3.6X magnification, 30 minutes per sample (3 channels).
4 1mm marmoset sections imaged with MegaSPIM
1mm Marmoset brain with CTB injections targeting dorsal raphe and hippocampus in 561 nm (magenta) and 647 nm (cyan) channels. Sectioned with Megatome and imaged on MegaSPIM. Samples courtesy of Dr. Denis Matrov and the Yogita Chudasam Lab at National Institutes of Health.
Human brain sample stained with phospho-tau and alpha-synuclein
Phospho-tau (cyan) and Alpha-synuclein (magenta) in 1mm-thick coronal section of human brain, sliced with Megatome and imaged with MegaSPIM at 1.8X magnification.
Pig brain section stained with Syto16, CD31, and Iba-1
Syto16 (cyan), CD31 (yellow), + Iba-1 (magenta) in 2mm-thick section of pig brain, sliced with Megatome and imaged with MegaSPIM at 1.8X (left) and 15X (right) magnifications.
Uncleared mouse brain section stained with Iba-1
Iba-1 in 100µm-thick uncleared section of mouse brain, sliced with Megatome and imaged with MegaSPIM at 15X magnification.

Light sheet illumination and detection

MegaSPIM uses patented axial sweeping technology to capture images with uniform axial resolution across the entire field of view without deconvolution. Long working-distance objectives positioned at 45 degrees above the sample plane allow imaging of samples as laterally large as the travel range of the stage.

Our deskewing algorithm seamlessly translates these tilted image stacks into standard XY planes, ready to be stitched into complete XYZ stacks for visualization and analysis.

Technical specifications

More than a microscope – a complete solution

Tissue Processing

Prepare samples with tools for preservation, clearing, labeling, & sectioning.

Light Sheet Imaging

Acquire spatially informative images with innovative microscopy techniques.

Image Analysis

Generate publication-quality data with robust analysis tools.

Recent publications citing the MegaSPIM light sheet microscope

Molecular identity of proprioceptor subtypes innervating different muscle groups in mice

Stephan Dietrich, Carlos Company, Kun Song, Elijah David Lowenstein, Levin Riedel, Carmen Birchmeier, Gaetano Gargiulo, Niccolò Zampieri 

Journal:
Nature Communications
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Spinal Cord, Limb
Products Cited:
EasyIndex
Powassan Virus Induces Structural Changes in Human Neuronal Cells In Vitro and Murine Neurons In Vivo

Jacob Nelson, Lorenzo Ochoa, Paula Villareal, Tiffany Dunn, Ping Wu, Gracie Vargas, Alexander N. Freiberg

Journal:
Pathogens
Publication Date:
Research Area:
Infectious Disease
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel
Cardiovascular baroreflex circuit moonlights in sleep control

Yuanyuan Yao, Zeke Barger, Mohammad Saffari Doost, Chak Foon Tso, Dana Darmohray, Daniel Silverman, Danqian Liu, Chenyan Ma, Ali Cetin, Shenqin Yao, Hongkui Zeng, Yang Dan

Journal:
Neuron
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
Characterizing the differential distribution and targets of Sumo1 and Sumo2 in the mouse brain

Terry R. Suk, Trina T. Nguyen, Zoe A. Fisk, Miso Mitkovski, Haley M. Geertsma, Jean-Louis A. Parmasad, Meghan M. Heer, Steve M. Callaghan, Fritz Benseler, Nils Brose, Marilyn Tirard, Maxime W.C. Rousseaux

Journal:
iScience
Publication Date:
Research Area:
Other
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
An ensemble recruited by α2a-adrenergic receptors is engaged in a stressor-specific manner in mice

Jordan A. Brown, Nicholas Petersen, Samuel W. Centanni, Allie Y. Jin, Hye Jean Yoon, Stephanie A. Cajigas, Michelle N. Bedenbaugh, Joseph R. Luchsinger, Sachin Patel, Erin S. Calipari, Richard B. Simerly, Danny G. Winder

Journal:
Neuropsychopharmacology
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, Passive Clearing Kit, SmartSPIM, SmartAnalytics
The whisking oscillator circuit

Jun Takatoh, Vincent Prevosto, P. M. Thompson, Jinghao Lu, Leeyup Chung, Andrew Harrahill, Shun Li, Shengli Zhao, Zhigang He, David Golomb, David Kleinfeld, Fan Wang

Journal:
Nature
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, Passive Clearing Kit
The role of somatosensory innervation of adipose tissues

Yu Wang, Verina H. Leung, Yunxiao Zhang, Victoria S. Nudell, Meaghan Loud, M. Rocio Servin-Vences, Dong Yang, Kristina Wang, Maria Dolores Moya-Garzon, Veronica L. Li, Jonathan Z. Long, Ardem Patapoutian, Li Ye

Journal:
Nature
Publication Date:
Research Area:
Neural Circuits, Metabolism
Tissue Species:
Mouse
Tissue Type:
Brain, Adipose, Whole Body
Products Cited:
EasyIndex, SmartSPIM
Periarteriolar spaces modulate cerebrospinal fluid transport into brain and demonstrate altered morphology in aging and Alzheimer’s disease

Humberto Mestre, Natasha Verma, Thom D. Greene, LiJing A. Lin, Antonio Ladron-de-Guevara, Amanda M. Sweeney, Guojun Liu, V. Kaye Thomas, Chad A. Galloway, Karen L. de Mesy Bentley, Maiken Nedergaard, Rupal I. Mehta

Journal:
Nature Communications
Publication Date:
Research Area:
Neurodegeneration
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, SmartSPIM, CRO Services
Organization of neural systems expressing melanocortin-3 receptors in the mouse brain: Evidence for sexual dimorphism

Michelle N. Bedenbaugh, Samantha C. Brener, Jose Maldonado, Rachel N. Lippert, Patrick Sweeney, Roger D. Cone, Richard B. Simerly

Journal:
Journal of Comparative Neurology
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartSPIM
Whole-Brain Wiring Diagram of Oxytocin System in Adult Mice

Seoyoung Son, Steffy B. Manjila, Kyra T. Newmaster, Yuan-ting Wu, Daniel J. Vanselow, Matt Ciarletta, Todd E. Anthony, Keith C. Cheng, Yongsoo Kim

Journal:
Journal of Neuroscience
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SmartSPIM
Neural circuit pathology driven by Shank3 mutation disrupts social behaviors

Sunwhi Kim, Yong-Eun Kim, Inuk Song, Yusuke Ujihara, Namsoo Kim, Yong-Hui Jiang, Henry H.Yin, Tae-HoLee, Il Hwan Kim

Journal:
Cell Reports
Publication Date:
Research Area:
Neural Circuits, Autism
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear
A critical role for touch neurons in a skin-brain pathway for stress resilience

Melanie D. Schaffler, Micah Johnson, Ben Hing, Paul Kahler, Ian Hultman, Sanvesh Srivastava, Justin Arnold, Julie N. Blendy, Rainbo Hultman, Ishmail Abdus-Saboor

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
Volumetric characterization of microvasculature in ex vivo human brain samples by serial sectioning optical coherence tomography

Jiarui Yang, Shuaibin Chang, Ichun Anderson Chen, Sreekanth Kura, Grace A. Rosen, Nicole A. Saltiel, Bertrand R. Huber, Divya Varadarajan, Yael Balbastre, Caroline Magnain, Shih-chi Chen, Bruce Fischl, Ann C. McKee, David A. Boas, Hui Wang

Journal:
IEEE Transactions on Biomedical Engineering
Publication Date:
Research Area:
Vasculature, Methods
Tissue Species:
Human
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, Passive Clearing Kit
Brain-wide mapping reveals that engrams for a single memory are distributed across multiple brain regions

Dheeraj S. Roy, Young-Gyun Park, Minyoung E. Kim, Ying Zhang, Sachie K. Ogawa, Nicholas DiNapoli, Xinyi Gu, Jae H. Cho, Heejin Choi, Lee Kamentsky, Jared Martin, Olivia Mosto, Tomomi Aida, Kwanghun Chung, Susumu Tonegawa

Journal:
Nature Communications
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, SmartLabel, SmartSPIM
HYBRiD: hydrogel-reinforced DISCO for clearing mammalian bodies

Victoria Nudell, Yu Wang, Zhengyuan Pang, Neeraj K. Lal, Min Huang, Namir Shaabani, Wesam Kanim, John Teijaro, Anton Maximov, Li Ye

Journal:
Nature Methods
Publication Date:
Research Area:
Methods
Tissue Species:
Mouse
Tissue Type:
Brain, Limb, Whole Body
Products Cited:
EasyIndex, SmartClear, SmartSPIM, SmartAnalytics
Orthogonally induced differentiation of stem cells for the programmatic patterning of vascularized organoids and bioprinted tissues

Mark A. Skylar-Scott, Jeremy Y. Huang, Aric Lu, Alex H.M. Ng, Tomoya Duenki, Lucy L. Nam, Sarita Damaraju, George M. Church, Jennifer A. Lewis

Journal:
Nature Biomedical Engineering
Publication Date:
Research Area:
Stem Cells
Tissue Species:
Human
Tissue Type:
Organoid
Products Cited:
EasyIndex
A constitutively expressed fluorescent, ubiquitination-based cell cycle indicator (FUCCI) in axolotls for studying tissue regeneration

Timothy J. Duerr, Eun Kyung Jeon, Kaylee M. Wells, Antonio Villanueva, Ashley W. Seifert, Catherine D. McCusker, James R. Monaghan

Journal:
Development
Publication Date:
Research Area:
Stem Cells
Tissue Species:
Axolotl
Tissue Type:
Spinal Cord, Limb
Products Cited:
EasyIndex
Functional dissection of neural circuitry using a genetic reporter for fMRI

Souparno Ghosh, Nan Li, Miriam Schwalm, Benjamin B. Bartelle, Tianshu Xie, Jade I. Daher, Urvashi D. Singh, Katherine Xie, Nicholas DiNapoli, Nicholas B. Evans, Kwanghun Chung, Alan Jasanoff

Journal:
Nature Neuroscience
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Rat
Tissue Type:
Brain
Products Cited:
SHIELD, SmartSPIM
Autism genes converge on asynchronous development of shared neuron classes

Bruna Paulsen, Silvia Velasco, Amanda J. Kedaigle, Martina Pigoni, Giorgia Quadrato, Anthony J. Deo, Xian Adiconis, Ana Uzquiano, Rafaela Sartore, Sung Min Yang, Sean K. Simmons, Panagiotis Symvoulidis, Kwanho Kim, Kalliopi Tsafou, Archana Podury, Catherine Abbate, Ashley Tucewicz, Samantha N. Smith, Alexandre Albanese, Lindy Barrett, Neville E. Sanjana, Xi Shi, Kwanghun Chung, Kasper Lage, Edward S. Boyden, Aviv Regev, Joshua Z. Levin, Paola Arlotta

Journal:
Nature
Publication Date:
Research Area:
Stem Cells, Autism
Tissue Species:
Human
Tissue Type:
Organoid
Products Cited:
SHIELD, SmartLabel, SmartSPIM
Hypothalamic GABRA5-positive Neurons Control Obesity via Astrocytic GABA

Moonsun Sa, Eun-Seon Yoo, Wuhyun Koh, Mingu Gordon Park, Hyun-Jun Jang, Yong Ryoul Yang, Jiwoon Lim, Woojin Won, Jea Kwon, Mridula Bhalla, Heeyoung An, Yejin Seong, Seung Eun Lee, Ki Duk Park, Pann-Ghill Suh, Jong-Woo Sohn, C. Justin Lee

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits, Metabolism
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
Passive Clearing Kit
MiRNA-Mediated Knockdown of ATXN3 Alleviates Molecular Disease Hallmarks in a Mouse Model for Spinocerebellar Ataxia Type 3

Rui Jorge Nobre, Diana D. Lobo, Carina Henriques, Sonia P. Duarte, Sara M. Lopes, Ana C. Silva, Miguel M. Lopes, Fanny Mariet, Lukas K. Schwarz, M.S. Baatje, Valerie Ferreira, Astrid Vallès, Luis Pereira de Almeida, Melvin M. Evers, Lodewijk J.A. Toonen

Journal:
Nucleic Acid Therapeutics
Publication Date:
Research Area:
Neurodegeneration
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, SmartSPIM
Lymphocyte access to lymphoma is impaired by high endothelial venule regression

Lutz Menzel, Maria Zschummel, Tadhg Crowley, Vedran Franke, Michael Grau, Carolin Ulbricht, Anja Hauser, Volker Siffrin, Marc Bajénoff, Sophie E. Acton, Altuna Akalin, Georg Lenz, Gerald Willimsky, Uta E. Höpken, Armin Rehm

Journal:
Cell Reports
Publication Date:
Research Area:
Cancer
Tissue Species:
Mouse
Tissue Type:
Lymph Node, Tumor
Products Cited:
SHIELD, EasyIndex, SmartClear
The Mouse Cortico-Basal Ganglia-Thalamic Network

Nicholas N. Foster, Joshua Barry, Laura Korobkova, Luis Garcia, Lei Gao, Marlene Becerra, Yasmine Sherafat, Bo Peng, Xiangning Li, Jun-Hyeok Choi, Lin Gou, Brian Zingg, Sana Azam, Darrick Lo, Neda Khanjani, Bin Zhang, Jim Stanis, Ian Bowman, Kaelan Cotter, Chunru Cao, Seita Yamashita, Amanda Tugangui, Anan Li, Tao Jiang, Xueyan Jia, Zhao Feng, Sarvia Aquino, Hyun-Seung Mun, Muye Zhu, Anthony Santarelli, Nora L. Benavidez, Monica Song, Gordon Dan, Marina Fayzullina, Sarah Ustrell, Tyler Boesen, David L. Johnson, Hanpeng Xu, Michael S. Bienkowski, X. William Yang, Hui Gong, Michael S. Levine, Ian Wickersham, Qingming Luo, Joel D. Hahn, Byung Kook Lim, Li I. Zhang, Carlos Cepeda, Houri Hintiryan, Hong-Wei Dong

Journal:
Nature
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartSPIM
Cellular Anatomy of the Mouse Primary Motor Cortex

Rodrigo Muñoz-Castañeda, Brian Zingg, Katherine S. Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N. Foster, Anan Li, Arun Narasimhan, Karla E. Hirokawa, Bingxing Huo, Samik Bannerjee, Laura Korobkova, Chris Sin Park, Young-Gyun Park, Michael S. Bienkowski, Uree Chon, Diek W. Wheeler, Xiangning Li, Yun Wang, Maitham Naeemi, Peng Xie, Lijuan Liu, Kathleen Kelly, Xu An, Sarojini M. Attili, Ian Bowman, Anastasiia Bludova, Ali Cetin, Liya Ding, Rhonda Drewes, Florence D’Orazi, Corey Elowsky, Stephan Fischer, William Galbavy, Lei Gao, Jesse Gillis, Peter A. Groblewski, Lin Gou, Joel D. Hahn, Joshua T. Hatfield, Houri Hintiryan, Jason Huang, Hideki Kondo, Xiuli Kuang, Philip Lesnar, Xu Li, Yaoyao Li, Mengkuan Lin, Darrick Lo, Judith Mizrachi, Stephanie Mok, Philip R. Nicovich, Ramesh Palaniswamy, Jason Palmer, Xiaoli Qi, Elise Shen, Yu-Chi Sun, Huizhong Tao, Wayne Wakemen, Yimin Wang, Shenqin Yao, Jin Yuan, Huiqing Zhan, Muye Zhu, Lydia Ng, Li I. Zhang, Byung Kook Lim, Michael Hawrylycz, Hui Gong, James C. Gee, Yongsoo Kim, Kwanghun Chung, X William Yang, Hanchuan Peng, Qingming Luo, Partha P. Mitra, Anthony M. Zador, Hongkui Zeng, Giorgio A. Ascoli, Z Josh Huang, Pavel Osten, Julie A. Harris, Hong-Wei Dong

Journal:
Nature
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, SmartSPIM
Acetylcholine-synthesizing macrophages in subcutaneous fat are regulated by b2-adrenergic signaling

Alexander J. Knights, Shanshan Liu, Yingxu Ma, Victoria S. Nudell, Eric Perkey, Matthew J. Sorensen, Robert T. Kennedy, Ivan Maillard, Li Ye, Heejin Jun, Jun Wu

Journal:
The Embo Journal
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Adipose
Products Cited:
EasyIndex, SmartSPIM
Organization of the inputs and outputs of the mouse superior colliculus

Nora L. Benavidez, Michael S. Bienkowski, Muye Zhu, Luis H. Garcia, Marina Fayzullina, Lei Gao, Ian Bowman, Lin Gou, Neda Khanjani, Kaelan R. Cotter, Laura Korobkova, Marlene Becerra, Chunru Cao, Monica Y. Song, Bin Zhang, Seita Yamashita, Amanda J. Tugangui, Brian Zingg, Kasey Rose, Darrick Lo, Nicholas N. Foster, Tyler Boesen, Hyun-Seung Mun, Sarvia Aquino, Ian R. Wickersham, Giorgio A. Ascoli, Houri Hintiryan, Hong-Wei Dong

Journal:
Nature Communications
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex
Dendritic calcium signals in rhesus macaque motor cortex drive an optical brain-computer interface

Eric M. Trautmann, Daniel J. O’Shea, Xulu Sun, James H. Marshel, Ailey Crow, Brian Hsueh, Sam Vesuna, Lucas Cofer, Gergő Bohner, Will Allen, Isaac Kauvar, Sean Quirin, Matthew MacDougall, Yuzhi Chen, Matthew P. Whitmire, Charu Ramakrishnan, Maneesh Sahani, Eyal Seidemann, Stephen I. Ryu, Karl Deisseroth, Krishna V. Shenoy

Journal:
Nature Communications
Publication Date:
Research Area:
Neural Interfaces
Tissue Species:
Macaque
Tissue Type:
Brain
Products Cited:
SmartClear
Delineation of an insula-BNST circuit engaged by struggling behavior that regulates avoidance in mice

Joseph R. Luchsinger, Tracy L. Fetterly, Kellie M. Williford, Gregory J. Salimando, Marie A. Doyle, Jose Maldonado, Richard B. Simerly, Danny G. Winder, Samuel W. Centanni

Journal:
Nature Communications
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartSPIM
Connectivity characterization of the mouse basolateral amygdalar complex

Houri Hintiryan, Ian Bowman, David L. Johnson, Laura Korobkova, Muye Zhu, Neda Khanjani, Lin Gou, Lei Gao, Seita Yamashita, Michael S. Bienkowski, Luis Garcia, Nicholas N. Foster, Nora L. Benavidez, Monica Y. Song, Darrick Lo, Kaelan R. Cotter, Marlene Becerra, Sarvia Aquino, Chunru Cao, Ryan P. Cabeen, Jim Stanis, Marina Fayzullina, Sarah A. Ustrell, Tyler Boesen, Amanda J. Tugangui, Zheng-Gang Zhang, Bo Peng, Michael S. Fanselow, Peyman Golshani, Joel D. Hahn, Ian R. Wickersham, Giorgio A. Ascoli, Li I. Zhang, Hong-Wei Dong

Journal:
Nature Communications
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex
Cholinergic neurons constitutively engage the ISR for dopamine modulation and skill learning in mice

Ashley R. Helseth, Ricardo Hernandez-Martinez, Victoria L. Hall, Matthew L. Oliver, Brandon D. Turner, Zachary F. Caffall, Joseph E. Rittiner, Miranda K. Shipman, Connor S. King, Viviana Gradinaru, Charles Gerfen, Mauro Costa-Mattioli, Nicole Calakos

Journal:
Science
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartSPIM, CRO Services
The melanocortin-3 receptor is a pharmacological target for the regulation of anorexia

Patrick Sweeney, Michelle N. Bedenbaugh, Jose Maldonado, Pauline Pan, Katelyn Fowler, Savannah Y. Williams, Luis E. Gimenez, Masoud Ghamari-Langroudi, Griffin Downing, Yijun Gui, Colleen K. Hadley, Stephen T. Joy, Anna K. Mapp, Richard B. Simerly, Roger D. Cone

Journal:
Science Translational Medicine
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartSPIM
Early outcomes after lung transplantation for severe COVID-19: a series of the first consecutive cases from four countries

Ankit Bharat, Tiago N Machuca, Melissa Querrey, Chitaru Kurihara, Rafael Garza-Castillon Jr, Samuel Kim, Adwaiy Manerikar, Andres Pelaez, Mauricio Pipkin, Abbas Shahmohammadi, Mindaugas Rackauskas, Suresh Rao KG, K R Balakrishnan, Apar Jindal, Lara Schaheen, Samad Hashimi, Bhuvin Buddhdev, Ashwini Arjuna, Lorenzo Rosso, Alessandro Palleschi, Christian Lang, Peter Jaksch, G R Scott Budinger, Mario Nosotti, Konrad Hoetzenecker

Journal:
The Lancet Respiratory Medicine
Publication Date:
Research Area:
Infectious Disease
Tissue Species:
Human
Tissue Type:
Lung
Products Cited:
SHIELD, EasyIndex, Passive Clearing Kit
A neuroskeletal atlas of the mouse limb

Madelyn R. Lorenz, Jennifer M. Brazill, Alec T. Beeve, Ivana Shen, Erica L. Scheller

Journal:
Journal of Bone and Mineral Research
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Limb
Products Cited:
SmartSPIM
Multiscale 3D phenotyping of human cerebral organoids

Alexandre Albanese, Justin M. Swaney, Dae Hee Yun, Nicholas B. Evans, Jenna M. Antonucci, Silvia Velasco, Chang Ho Sohn, Paola Arlotta, Lee Gehrke, Kwanghun Chung

Journal:
Scientific Reports
Publication Date:
Research Area:
Stem Cells
Tissue Species:
Human
Tissue Type:
Organoid
Products Cited:
SHIELD, SmartLabel, SmartSPIM, EasyClear
Lung transplantation for patients with severe COVID-19

Ankit Bharat, Melissa Querrey, Nikolay S. Markov, Samuel Kim, Chitaru Kurihara, Rafael Garza-Castillon, Adwaiy Manerikar, Ali Shilatifard, Rade Tomic, Yuliya Politanska, Hiam Abdala-Valencia, Anjana V. Yeldandi, Jon W. Lomasney, Alexander V. Misharin, G.R. Scott Budinger

Journal:
Science Translational Medicine
Publication Date:
Research Area:
Infectious Disease
Tissue Species:
Human
Tissue Type:
Lung
Products Cited:
SHIELD, EasyIndex, Passive Clearing Kit
Evidence for genetically distinct direct and indirect spinocerebellar pathways mediating proprioception

Iliodora V. Pop, Felipe Espinosa, Megan Goyal, Bishakha Mona, Mark A. Landy, Osita W. Ogujiofor, Kevin M. Dean, Channabasavaiah B. Gurumurthy, Helen C. Lai

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain, Spinal Cord
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartSPIM, CRO Services
Elasticizing tissues for reversible shape transformation and accelerated molecular labeling

Taeyun Ku, Webster Guan, Nicholas B. Evans, Chang Ho Sohn, Alexandre Albanese, Joon-Goon Kim, Matthew P. Frosch, Kwanghun Chung

Journal:
Nature Methods
Publication Date:
Research Area:
Methods
Tissue Species:
Mouse, Human
Tissue Type:
Brain
Products Cited:
SHIELD
Self-Supervised Feature Extraction for 3D Axon Segmentation

Tzofi Klinghoffer, Peter Morales, Young-Gyun Park, Nicholas Evans, Kwanghun Chung, Laura J. Brattain

Journal:
arXiv
Publication Date:
Research Area:
Methods
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, SmartSPIM
The mouse cortico-tectal projectome

Nora L. Benavidez, Michael S. Bienkowski, Neda Khanjani, Ian Bowman, Marina Fayzullina, Luis Garcia, Lei Gao, Laura Korobkova, Lin Gou, Kaelan Cotter, Marlene Becerra, Sarvia Aquino, Chunru Cao, Nicholas N. Foster, Monica Y. Song, Bin Zhang, Seita Yamashita, Muye Zhu, Darrick Lo, Tyler Boesen, Brian Zingg, Anthony Santarelli, Ian R. Wickersham, Giorgio A. Ascoli, Houri Hintiryan, Hong-Wei Dong

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex
Motor neurons involved in fine motor control are labeled by tracing Atoh1-lineage neurons in the spinal cord

Osita W. Ogujiofor, Iliodora V. Pop, Felipe Espinosa, Razaq O. Durodoye, Michael L. Viacheslavov, Rachel Jarvis, Mark A. Landy, Gordon Fishell, Robert P. Machold, Helen C. Lai

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain, Spinal Cord
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartSPIM, CRO Services
Scalable and Isotropic Expansion of Tissues with Simply Tunable Expansion Ratio

Han-Eol Park, Dongkil Choi, Ji Su Park, Changgon Sim, Sohyun Park, Sunah Kang, Hyunsoo Lim, Myungsun Lee, Jaeyoun Kim, Jinyoung Pac, Kunsoo Rhee, Junho Lee, Yunjong Lee, Yan Lee, Sung-Yon Kim

Journal:
Advanced Science
Publication Date:
Research Area:
Methods
Tissue Species:
Mouse, Human, Nematode
Tissue Type:
Brain
Products Cited:
EasyGel
Self-Organized Synchronous Calcium Transients in a Cultured Human Neural Network Derived from Cerebral Organoids

Hideya Sakaguchi, Yuki Ozaki, Tomoka Ashida, Takayoshi Matsubara, Naotaka Oishi, Shunsuke Kihara, Jun Takahashi

Journal:
Stem Cell Reports
Publication Date:
Research Area:
Stem Cells
Tissue Type:
Organoid
Products Cited:
SmartClear
Brain-Wide Mapping of Contextual Fear Memory Engram Ensembles Supports the Dispersed Engram Complex Hypothesis

Dheeraj S. Roy, Young-Gyun Park, Sachie K. Ogawa, Jae H. Cho, Heejin Choi, Lee Kamensky, Jared Martin, Kwanghun Chung, Susumu Tonegawa

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, SmartClear, SmartSPIM
Ultrafast immunostaining of organ-scale tissues for scalable proteomic phenotyping

Dae Hee Yun, Young-Gyun Park, Jae Hun Cho, Lee Kamentsky, Nicholas B. Evans, Alex Albanese, Katherine Xie, Justin Swaney, Chang Ho Sohn, Yuxuan Tian, Qiangge Zhang, Gabi Drummond, Webster Guan, Nicholas DiNapoli, Heejin Choi, Hae-Yoon Jung, Luzdary Ruelas, Guoping Feng, Kwanghun Chung

Journal:
bioRxiv
Publication Date:
Research Area:
Methods
Tissue Species:
Mouse, Marmoset
Tissue Type:
Brain, Organoid
Products Cited:
SHIELD, SmartClear, SmartSPIM
Biomaterial substrate-derived compact cellular spheroids mimicking the behavior of pancreatic cancer and microenvironment

Chui-Wei Wonga, Hao-Wei Hana, Yu-Wen Tienb, Shan-hui Hsua

Journal:
Biomaterials
Publication Date:
Research Area:
Cancer, Stem Cells
Tissue Type:
Organoid
Products Cited:
EasyIndex
Multi-sensory Gamma Stimulation Ameliorates Alzheimer’s-Associated Pathology and Improves Cognition

Anthony J. Martorell, Abigail L. Paulson, Ho-Jun Suk, Fatema Abdurrob, Gabrielle T. Drummond, Webster Guan, Jennie Z. Young, David Nam-Woo Kim, Oleg Kritskiy, Scarlett J. Barker, Vamsi Mangena, Stephanie M. Prince, Emery N. Brown, Kwanghun Chung, Edward S. Boyden, Annabelle C. Singer, Li-Huei Tsai

Journal:
Cell
Publication Date:
Research Area:
Neurodegeneration
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, SmartClear
Scalable image processing techniques for quantitative analysis of volumetric biological images from light-sheet microscopy

Justin Swaney, Lee Kamentsky, Nicholas B Evans, Katherine Xie, Young-Gyun Park, Gabrielle Drummond, Dae Hee Yun, Kwanghun Chung

Journal:
bioRxiv
Publication Date:
Research Area:
Methods
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartSPIM, SmartAnalytics
Protection of tissue physicochemical properties using polyfunctional crosslinkers

Young-Gyun Park, Chang Ho Sohn, Ritchie Chen, Margaret McCue, Dae Hee Yun, Gabrielle T. Drummond, Taeyun Ku, Nicholas B. Evans, Hayeon, Caitlyn Oak, Wendy Trieu, Heejin Choi, Xin Jin, Varoth Lilascharoen, Ji Wang, Matthias C. Truttmann, Helena W. Qi , Hidde L. Ploegh, Todd R. Golub, Shih-Chi Chen, Matthew P. Frosch, Heather J. Kulik, Byung Kook Lim, Kwanghun Chung

Journal:
Nature Biotechnology
Publication Date:
Research Area:
Methods
Tissue Species:
Mouse, Human
Tissue Type:
Brain, Biopsy
Products Cited:
SHIELD, SmartClear, SmartSPIM
Optical Clearing in the Kidney Reveals Potassium-Mediated Tubule Remodeling

Turgay Saritas, Victor G. Puelles, Xiao-Tong Su, James A. McCormick, Paul A. Welling, David H. Ellison

Journal:
Cell Reports
Publication Date:
Research Area:
Other
Tissue Species:
Mouse
Tissue Type:
Kidney
Products Cited:
EasyIndex, SmartClear
Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues

Taeyun Ku, Justin Swaney, Jeong-Yoon Park, Alexandre Albanese, Evan Murray, Jae Hun Cho, Young-Gyun Park, Vamsi Mangena, Jiapei Chen, Kwanghun Chung

Journal:
Nature Biotechnology
Publication Date:
Research Area:
Methods
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
EasyGel, EasyClear
PIEZO2 in somatosensory neurons controls gastrointestinal transit

M. Rocio Servin-Vences, Ruby M. Lam, Alize Koolen, Yu Wang, Dimah N. Saade, Meaghan Loud, Halil Kacmaz, Arthur Beyder, Kara L. Marshall, Carsten G. Bönnemann, Alexander T. Chesler, Ardem Patapoutian

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
GI Tract
Products Cited:
EasyIndex
Arachnoid granulations are lymphatic conduits that communicate with bone marrow and dura-arachnoid stroma

Trishna Shah, Sue E. Leurgans, Rashi I. Mehta, Jingyun Yang, Chad A. Galloway, Karen L. de Mesy Bentley, Julie A. Schneider, Rupal I. Mehta

Journal:
Journal of Experimental Medicine
Publication Date:
Research Area:
Other
Tissue Species:
Human
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, SmartSPIM
Whole-Brain Clearing and Immunolabelling in the African Killifish Nothobranchius furzeri

Augusto Ortega Granillo, Fengyan Deng, Hannah Wilson, Yongfu Wang, Alejandro Sánchez Alvarado

Journal:
Emerging Model Organisms
Publication Date:
Research Area:
Methods
Tissue Species:
Killifish
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel
Shared and Distinct Brain Regions Targeted for Immediate Early Gene Expression by Ketamine and Psilocybin

Pasha A. Davoudian, Ling-Xiao Shao, Alex C. Kwan

Journal:
ACS Chemical Neuroscience
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
Traumatic axonal injury in the optic nerve: the selective role of SARM1 in the evolution of distal axonopathy

Athanasios S. Alexandris, Youngrim Lee, Mohamed Lehar, Zahra Alam, James McKenney, Dianela Perdomo, Jiwon Ryu, Derek Welsbie, Donald J. Zack, Vassilis Koliatsos

Journal:
Journal of Neurotrauma
Publication Date:
Research Area:
Brain Injury
Tissue Species:
Mouse
Tissue Type:
Spinal Cord/Other Neuro
Products Cited:
SHIELD
Distinct tissue niches direct lung immunopathology via CCL18 and CCL21 in severe COVID-19

Ronja Mothes, Anna Pascual-Reguant, Ralf Koehler, Juliane Liebeskind, Alina Liebheit, Sandy Bauherr, Lars Philipsen, Carsten Dittmayer, Michael Laue, Regina von Manitius, Sefer Elezkurtaj, Pawel Durek, Frederik Heinrich, Gitta A. Heinz, Gabriela M. Guerra, Benedikt Obermayer, Jenny Meinhardt, Jana Ihlow, Josefine Radke, Frank L. Heppner, Philipp Enghard, Helena Stockmann, Tom Aschman, Julia Schneider, Victor M. Corman, Leif E. Sander, Mir-Farzin Mashreghi, Thomas Conrad, Andreas C. Hocke, Raluca A. Niesner, Helena Radbruch, Anja E. Hauser

Journal:
Nature Communications
Publication Date:
Research Area:
Infectious Disease
Tissue Species:
Mouse
Tissue Type:
Lung
Products Cited:
EasyIndex, SmartClear
Fabrication and Assembly Techniques for Sub-mm Battery-Free Epicortical Implants

Adam Khalifa, Mehdi Nasrollahpour, Ali Nezaratizadeh, Xiao Sha, Milutin Stanaćević, Nian X. Sun, Sydney S. Cash

Journal:
Micromachines
Publication Date:
Research Area:
Neural Interfaces
Tissue Species:
Rat
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
Dephosphorylation of 4EBP1/2 Induces Prenatal Neural Stem Cell Quiescence

Laura C. Geben, Asa A. Brockman, Mary Bronwen L. Chalkley, Serena R. Sweet, Julia E. Gallagher, Alexandra L. Scheuing, Richard B. Simerly, Kevin C. Ess, Jonathan M. Irish, Rebecca A. Ihrie

Journal:
bioRxiv
Publication Date:
Research Area:
Stem Cells
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SmartSPIM
Hippocampal engrams generate flexible behavioral responses and brain-wide network states

Kaitlyn E. Dorst, Ryan A. Senne, Anh H. Diep, Antje R. de Boer, Rebecca L. Suthard, Heloise Leblanch, Evan A. Ruesch, Sara Skelton, Olivia P. McKissick, John H. Bladon, Steve Ramirez

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, SmartAnalytics, CRO Services
Cardiogenic control of affective behavioural state

Brian Hsueh, Ritchie Chen, YoungJu Jo, Daniel Tang, Misha Raffiee, Yoon Seok Kim, Masatoshi Inoue, Sawyer Randles, Charu Ramakrishnan, Sneha Patel, Doo Kyung Kim, Tony X. Liu, Soo Hyun Kim, Longzhi Tan, Leili Mortazavi, Arjay Cordero, Jenny Shi, Mingming Zhao, Theodore T. Ho, Ailey Crow, Ai-Chi Wang Yoo, Cephra Raja, Kathryn Evans, Daniel Bernstein, Michael Zeineh, Maged Goubran, Karl Deisseroth

Journal:
Nature
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SmartClear
A New Behavioral Paradigm for Studying Frustrative Non-reward in Juvenile Mice

Aijaz Ahmad Naik, Maxime Munyeshyaka, Xiaoyu Ma, Ellen Leibenluft, Zheng Li

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, Passive Clearing Kit, SmartSPIM, CRO Services
Forty-hertz light stimulation does not entrain native gamma oscillations in Alzheimer’s disease model mice

Marisol Soula, Alejandro Martín-Ávila, Yiyao Zhang, Annika Dhingra, Noam Nitzan, Martin J. Sadowski, Wen-Biao Gan, György Buzsáki

Journal:
Nature
Publication Date:
Research Area:
Neurodegeneration
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartLabel, Passive Clearing Kit, SmartSPIM, SmartAnalytics, CRO Services
BNST PKCδ neurons are activated by specific aversive conditions to promote anxiety-like behavior

Kellie M. Williford, Anne Taylor, James R. Melchior, Hye Jean Yoon, Eryn Sale, Milen D. Negasi, Danielle N. Adank, Jordan A. Brown, Michelle N. Bedenbaugh, Joseph R. Luchsinger, Samuel W. Centanni, Sachin Patel, Erin S. Calipari, Richard B. Simerly, Danny G. Winder

Journal:
Neuropsychopharmacology
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, Passive Clearing Kit, SmartSPIM, SmartAnalytics
Intra-tracheally injected human induced pluripotent stem cell-derived pneumocytes and endothelial cells engraft in the distal lung and ameliorate emphysema in a rat model

Wafa Altalhi, Tong Wu, Gregory R. Wojtkiewicz, Sydney Jeffs, Kenji Miki, Harald C. Ott

Journal:
Journal of Thoracic and Cardiovascular Surgery
Publication Date:
Research Area:
Stem Cells
Tissue Species:
Rat
Tissue Type:
Lung
Products Cited:
EasyIndex
Merged magnetic resonance and light sheet microscopy of the whole mouse brain

G. Allan Johnson, Yuqi Tian, David G. Ashbrook, Gary P. Cofer, James J. Cook, James C. Gee, Adam Hall, Kathryn Hornburg, Yi Qi, Fang-Cheng Yeh, Nian Wang, Leonard E. White, Robert W. Williams

Journal:
PNAS
Publication Date:
Research Area:
Neurodegeneration, Methods
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, SmartSPIM
Removing the Gβγ-SNAP25 brake on exocytosis enhances insulin action, promotes adipocyte browning, and protects against diet-induced obesity

Ryan P. Ceddia, Zack Zurawski, Analisa Thompson Gray, Feyisayo Adegboye, Fubiao Shi, Dianxin Liu, Jose Maldonado, Julio E. Ayala, Owen P. McGuinness, Sheila Collins, Heidi E. Hamm

Journal:
bioRxiv
Publication Date:
Research Area:
Metabolism
Tissue Species:
Mouse
Tissue Type:
Adipose
Products Cited:
SmartSPIM
Leveraging the Power of 3D Brain-Wide Imaging and Mapping Tools for Brain Injury Research in Murine Models

Mehwish Anwer, Jeffrey LeDue, Zefang Wang, Sarah Wang, Wai Hang Cheng, Mariia Burdyniuk, Honor Cheung, Jianjia Fan, Carlos Barron, Peter A. Cripton, Mark S. Cembrowski, Fabio Rossi, Timothy H. Murphy, Cheryl L. Wellington

Journal:
bioRxiv
Publication Date:
Research Area:
Brain Injury, Methods
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, SmartAnalytics, CRO Services
Loss of insulin signaling in astrocytes exacerbates Alzheimer-like phenotypes in a 5xFAD mouse model

Wenqiang Chen, Qian Huang, Ekaterina Katie Lazdon, Antonio Gomes, Marisa Wong, Emily Stephens, Tabitha Grace Royal, Dan Frenkel, Weikang Cai, C. Ronald Kahn

Journal:
PNAS
Publication Date:
Research Area:
Neurodegeneration, Metabolism
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, Passive Clearing Kit, SmartSPIM, SmartAnalytics, CRO Services
Rapid and precise genome engineering in a naturally short-lived vertebrate

Claire N. Bedbrook, Ravi D. Nath, Rahul Nagvekar, Karl Deisseroth, Anne Brunet

Journal:
eLife
Publication Date:
Research Area:
Methods
Tissue Species:
Killifish
Tissue Type:
Brain, Whole Body, Spinal Cord/Other Neuro
Products Cited:
SHIELD, EasyIndex
Aging drives cerebrovascular network remodeling and functional changes in the mouse brain

Hannah C. Bennett, Qingguang Zhang, Yuan-ting Wu, Uree Chon, Patrick J. Drew, Yongsoo Kim

Journal:
bioRxiv
Publication Date:
Research Area:
Neurodegeneration, Vasculature
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SmartSPIM
D-serine availability modulates prefrontal cortex inhibitory interneuron development and circuit maturation

Oluwarotimi O. Folorunso, Stephanie E. Brown, Jugajyoti Baruah, Theresa L. Harvey, Shekib A. Jami, Inna Radzishevsky, Herman Wolosker, James M. McNally, John A. Gray, Anju Vasudevan, Darrick T. Balu

Journal:
Scientific Reports
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, Passive Clearing Kit, SmartSPIM, CRO Services
Spatiotemporal organization of prefrontal norepinephrine influences neuronal activity

Samira Glaeser-Khan, Neil K. Savalia, Jianna Cressy, Jiesi Feng, Yulong Li, Alex C. Kwan, Alfred P. Kaye

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, SmartAnalytics, CRO Services
Cortical Brain Injury Causes Retrograde Degeneration of Afferent Basal Forebrain Cholinergic Neurons via the p75NTR

Srestha Dasgupta, Laura Montroull, Mansi Pandya, Juan P. Zanin, Wei Wang, Zhuhao Wu, Wilma J. Friedman

Journal:
eNeuro
Publication Date:
Research Area:
Neurodegeneration, Brain Injury
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SmartSPIM
Xiphoid nucleus of the midline thalamus controls cold-induced food seeking

Neeraj K. Lal, Phuong Le, Samarth Aggarwal, Alan Zhang, Kristina Wang, Tianbo Qi, Zhengyuan Pang, Dong Yang, Victoria Nudell, Gene W. Yeo, Alexander S. Banks, Li Ye

Journal:
Nature
Publication Date:
Research Area:
Metabolism
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
Glutamatergic Supramammillary Nucleus Neurons Respond to Threatening Stressors and Promote Active Coping

Abraham Escobedo, Salli-Ann Holloway, Megan Votoupal, Aaron L. Cone, Hannah E. Skelton, Alex A. Legaria, Imeh Ndiokho, Tasheia Floyd, Alexxai V. Kravitz, Michael R. Bruchas, Aaron J. Norris

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartSPIM, CRO Services
Drugs of abuse hijack a mesolimbic pathway that processes homeostatic need

Bowen Tan, Caleb J. Browne, Tobias Nöbauer, Alipasha Vaziri, Jeffrey M. Friedman, Eric J. Nestler

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
Cellular and molecular basis of leptin resistance

Bowen Tan, Kristina Hedbacker, Leah Kelly, Zhaoyue Zhang, Ji-Dung Luo, Joshua D. Rabinowitz, Jeffrey M. Friedman

Journal:
bioRxiv
Publication Date:
Research Area:
Metabolism
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
Developmental Mouse Brain Common Coordinate Framework

Fae A. Kronman, Josephine K. Liwang, Rebecca Betty, Daniel J. Vanselow, Yuan-ting Wu, Nicholas J. Tustison, Ashwin Bhandiwad, Steffy B. Manjila, Jennifer A. Minteer, Donghui Shin, Choong Heon Lee, Rohan Patil, Jeffrey T. Duda, Luis Puelles, James C. Gee, Jiangyang Zhang, Lydia Ng, Yongsoo Kim

Journal:
bioRxiv
Publication Date:
Research Area:
Methods, Other
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, Passive Clearing Kit, SmartSPIM
A Light sheet fluorescence microscopy and machine learning-based approach to investigate drug and biomarker distribution in whole organs and tumors

Niyanta Kumar, Petr Hrobar, Martin Vagenknecht, Jindrich Soukup, Nadia Patterson, Peter Bloomingdale, Tomoko Freshwater, Sophia Bardehle, Roman Peter, Ruban Mangadu, Cinthia V Pastuskovas, Chiswili Yves Chabu, Mark T. Cancilla

Journal:
bioRxiv
Publication Date:
Research Area:
Neurodegeneration, Cancer, Vasculature, Methods
Tissue Species:
Mouse
Tissue Type:
Brain, Tumor
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, SmartSPIM, SmartAnalytics, CRO Services
Mapping oto-pharyngeal development in a human inner ear organoid model

Matthew R. Steinhart, Wouter H. van der Valk, Daniel Osorio, Sara A. Serdy, Jingyuan Zhang, Carl Nist-Lund, Jin Kim, Cynthia Moncada-Reid, Liang Sun, Jiyoon Lee, Karl R. Koehler

Journal:
Development
Publication Date:
Research Area:
Stem Cells
Tissue Species:
Human
Tissue Type:
Organoid
Products Cited:
SHIELD, EasyIndex
Vagal sensory neurons mediate the Bezold–Jarisch reflex and induce syncope

Jonathan W. Lovelace, Jingrui Ma, Saurabh Yadav, Karishma Chhabria, Hanbing Shen, Zhengyuan Pang, Tianbo Qi, Ruchi Sehgal, Yunxiao Zhang, Tushar Bali, Thomas Vaissiere, Shawn Tan, Yuejia Liu, Gavin Rumbaugh, Li Ye, David Kleinfeld, Carsen Stringer & Vineet Augustine

Journal:
Nature
Publication Date:
Research Area:
Neural Circuits, Neural Interfaces, Vasculature
Tissue Species:
Mouse
Tissue Type:
Brain, Lung, GI Tract, Spinal Cord/Other Neuro, Heart
Products Cited:
SmartSPIM
A topographical atlas of α-synuclein cell type-specfic expression in adult mouse brain and peripheral organs

Maxime W C Rousseaux, Haley Geertsma, Zoe Fisk, Lillian Sauline, Alice Prigent, Kevin Kurgat, Steve Callaghan, Julianna Tomlinson, Michael Henderson

Journal:
Research Square
Publication Date:
Research Area:
Neurodegeneration
Tissue Species:
Mouse
Tissue Type:
Brain, Spinal Cord, GI Tract
Products Cited:
SHIELD, CRO Services
Fatal iatrogenic cerebral β-amyloid-related arteritis in a woman treated with lecanemab for Alzheimer’s disease

Elena Solopova, Wilber Romero-Fernandez, Hannah Harmsen, Lissa Ventura-Antunes, Emmeline Wang, Alena Shostak, Jose Maldonado, Manus J. Donahue, Daniel Schultz, Thomas M. Coyne, Andreas Charidimou & Matthew Schrag.

Journal:
Nature Communications
Publication Date:
Research Area:
Neurodegeneration
Tissue Species:
Human
Tissue Type:
Brain, Biopsy
Products Cited:
SmartSPIM
Opioid-driven disruption of the septal complex reveals a role for neurotensin-expressing neurons in withdrawal

Rhiana C. Simon, Weston T. Fleming, Pranav Senthilkumar, Brandy A. Briones1,2, Kentaro K. Ishii, Madelyn M. Hjort, Madison M. Martin, Koichi Hashikawa, Andrea D. Sanders, Sam A. Golden, Garret D. Stuber.

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits, Other
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartSPIM
Microglia regulate sleep through calcium-dependent modulation of norepinephrine transmission.

Chenyan Ma, Bing Li, Daniel Silverman, Xinlu Ding, Anan Li, Chi Xiao, Ganghua Huang, Kurtresha Worden, Sandra Muroy, Wei Chen, Zhengchao Xu, Chak Foon Tso, Yixuan Huang, Yufan Zhang, Qingming Luo, Kaoru Saijo & Yang Dan.

Journal:
Nature Neuroscience
Publication Date:
Research Area:
Neural Circuits, Other
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SmartSPIM, CRO Services
Hormonal basis of sex differences in anesthetic sensitivity

Andrzej Z. Wasilczuk, Cole Rinehart, Adeeti Aggarwal, Martha E. Stone, George A. Mashour, Michael S. Avidan, Max B. Kelz, Alex Proekt , and ReCCognition Study Group.

Journal:
PNAS
Publication Date:
Research Area:
Other
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, SmartSPIM
ASCL1 induces neurogenesis in human Müller glia

Juliette Wohlschlegel, Connor Finkbeiner, Dawn Hoffer, Faith Kierney, Aric Prieve, Alexandria D. Murry, Alexandra K. Haugan, Isabel Ortuño-Liazaran, Fred Rieke, Sam A. Golden, Thomas A. Reh.

Journal:
Stem Cell Reports
Publication Date:
Research Area:
Neurodegeneration, Brain Injury
Tissue Species:
Human
Tissue Type:
Organoid
Products Cited:
SmartSPIM, SmartAnalytics
Phosphorylation of pyruvate dehydrogenase inversely associates with neuronal activity.

Dong Yang, Yu Wang, Tianbo Qi, Xi Zhang, Leyao Shen, Jingrui Ma, Zhengyuan Pang, Neeraj K. Lal, Daniel B. McClatchy, Saba Heydari Seradj, Verina H. Leung, Kristina Wang, Yi Xie, Filip S. Polli, Anton Maximov, Oscar Christian Gonzalez, Luis de Lecea, Hollis T. Cline, Vineet Augustine, John R. Yates III, and Li Ye.

Journal:
Neuron
Publication Date:
Research Area:
Neural Circuits, Neural Interfaces
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, SmartAnalytics, CRO Services
Massively parallel in vivo Perturb-seq reveals celltype-specific transcriptional networks in cortical development

Xinhe Zheng, Boli Wu, Yuejia Liu, Sean K. Simmons, Kwanho Kim, Grace S. Clarke, Abdullah Ashiq, Joshua Park, Jiwen Li, Zhilin Wang, Liqi Tong, Qizhao Wang, Keerthi T. Rajamani, Rodrigo Muñoz-Castañeda, Shang Mu, Tianbo Qi, Yunxiao Zhang, Zi Chao Ngiam, Naoto Ohte, Carina Hanashima, Zhuhao Wu, Xiangmin Xu, Joshua Z. Levin, and Xin Jin.

Journal:
Cell Short Article
Publication Date:
Research Area:
Other
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SmartSPIM
Classification of psychedelic drugs based on brain-wide imaging of cellular c-Fos expression

Farid Aboharb, View ORCID ProfilePasha A. Davoudian, Ling-Xiao Shao, View ORCID ProfileClara Liao, Gillian N. Rzepka, Cassandra Wojtasiewicz, Mark Dibbs, Jocelyne Rondeau, Alexander M. Sherwood, View ORCID ProfileAlfred P. Kaye, View ORCID ProfileAlex C. Kwan.

Journal:
bioRxiv
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
CRO Services
Integrated platform for multiscale molecular imaging and phenotyping of the human brain

Juhyuk Park†, Ji Wang†, Webster Guan†, Lars A. Gjesteby, Dylan Pollack, Lee Kamentsky, Nicholas B. Evans, Jeff Stirman, Xinyi Gu, Chuanxi Zhao, Slayton Marx, Minyoung E. Kim, Seo Woo Choi, Michael Snyder, David Chavez, Clover Su-Arcaro, Yuxuan Tian, Chang Sin Park, Qiangge Zhang, Dae Hee Yun, Mira Moukheiber, Guoping Feng, X. William Yang, C. Dirk Keene, Patrick R. Hof, Satrajit S. Ghosh, Matthew P. Frosch, Laura J. Brattain, Kwanghun Chung*

Journal:
Science
Publication Date:
Tissue Species:
Human
Tissue Type:
Brain
Products Cited:
SHIELD, Megatome, MegaSPIM
Brain vasculature accumulates tau and is spatially related to tau tangle pathology in Alzheimer’s disease

Zachary Hoglund, Nancy Ruiz-Uribe, Eric del Sastre, Benjamin Woost, Elizabeth Bader, Joshua Bailey, Bradley T. Hyman, Theodore Zwang & Rachel E. Bennett

Journal:
Acta Neuropathologica
Publication Date:
Research Area:
Mapping
Tissue Species:
Human
Tissue Type:
Brain
Products Cited:
EasyIndex, MegaSPIM
Experience-dependent information routing through the basolateral amygdala shapes behavioral outcomes

Pantelis Antonoudiou, Bradly T. Stone, Phillip L.W. Colmers, Aidan Evans-Strong, Eric Teboul, Najah L. Walton, Grant L. Weiss, Jamie Maguire.

Journal:
Cell Reports
Publication Date:
Research Area:
Neural Circuits
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, SmartSPIM
Serine racemase deletion alters adolescent social behavior and whole-brain cFos activation

Stephanie E. Brown, Ziyi (Zephyr) Wang, Emily L. Newman, Elif Engin, Sabina Berretta, Darrick T. Balu, Oluwarotimi O. Folorunso.

Journal:
Frontiers in Psychiatry
Publication Date:
Research Area:
cFos, Mapping
Tissue Species:
Mouse
Tissue Type:
Heart
Products Cited:
SHIELD, SmartBatch+, SmartSPIM, CRO Services
A cocaine-activated ensemble exerts increased control over behavior while decreasing in size

Kimberly C. Thibeault, Michael Z. Leonard, Veronika Kondev, Soren D. Emerson, Rishik Bethi, Alberto J. Lopez, Jonathon P. Sens, Brett P. Nabit, Hannah B. Elam, Danny G. Winder, Sachin Patel, Drew D. Kiraly, Brad A. Grueter, Erin S. Calipari.

Journal:
Biological Psychiatry
Publication Date:
Research Area:
cFos, Mapping
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
SHIELD, SmartBatch+, SmartSPIM, CRO Services
Cosmic kidney disease: an integrated pan-omic, physiological and morphological study into spaceflight-induced renal dysfunction

Keith Siew, Kevin A. Nestler, Charlotte Nelson, Viola D’Ambrosio, Chutong Zhong, Zhongwang Li, Alessandra Grillo, Elizabeth R. Wan, Vaksha Patel, Eliah Overbey, JangKeun Kim, Sanghee Yun, Michael B. Vaughan, Chris Cheshire, Laura Cubitt, Jessica Broni-Tabi, Maneera Yousef Al-Jaber, Valery Boyko, Cem Meydan, Peter Barker, Shehbeel Arif, Fatemeh Afsari, Noah Allen, Mohammed Al-Maadheed, Selin Altinok, Nourdine Bah, Samuel Border, Amanda L. Brown, Keith Burling, Margareth Cheng-Campbell, Lorianna M. Colón, Lovorka Degoricija, Nichola Figg, Rebecca Finch, Jonathan Foox, Pouya Faridi, Alison French, Samrawit Gebre, Peter Gordon, Nadia Houerbi, Hossein Valipour Kahrood, Frederico C. Kiffer, Aleksandra S. Klosinska, Angela Kubik, Han-Chung Lee, Yinghui Li, Nicholas Lucarelli, Anthony L. Marullo, Irina Matei, Colleen M. McCann, Sayat Mimar, Ahmed Naglah, Jérôme Nicod, Kevin M. O’Shaughnessy, Lorraine Christine De Oliveira, Leah Oswalt, Laura Ioana Patras, San-huei Lai Polo, María Rodríguez-Lopez, Candice Roufosse, Omid Sadeghi-Alavijeh, Rebekah Sanchez-Hodge, Anindya S. Paul, Ralf Bernd Schittenhelm, Annalise Schweickart, Ryan T. Scott, Terry Chin Choy Lim Kam Sian, Willian A. da Silveira, Hubert Slawinski, Daniel Snell, Julio Sosa, Amanda M. Saravia-Butler, Marshall Tabetah, Erwin Tanuwidjaya, Simon Walker-Samuel, Xiaoping Yang, Yasmin, Haijian Zhang, Jasminka Godovac-Zimmermann, Pinaki Sarder, Lauren M. Sanders, Sylvain V. Costes, Robert A. A. Campbell, Fathi Karouia, Vidya Mohamed-Alis, Samuel Rodriques, Steven Lynham, Joel Ricky Steele, Sergio Baranzini, Hossein Fazelinia, Zhongquan Dai, Akira Uruno, Dai Shiba, Masayuki Yamamoto, Eduardo A.C.Almeida, Elizabeth Blaber, Jonathan C. Schisler, Amelia J. Eisch, Masafumi Muratani, Sara R. Zwart, Scott M. Smith, Jonathan M. Galazka, Christopher E. Mason, Afshin Beheshti & Stephen B. Walsh.

Journal:
Nature Communications
Publication Date:
Research Area:
Mapping
Tissue Species:
Mouse
Tissue Type:
Kidney
Products Cited:
SHIELD, EasyIndex
Mimicking opioid analgesia in cortical pain circuits

Justin G. James, Nora M. McCall, Alex I. Hsu, Corinna S. Oswell, Gregory J. Salimando, Malaika Mahmood, Lisa M. Wooldridge, Meghan Wachira, Adrienne Jo, Raquel Adaia Sandoval Ortega, Jessica A. Wojick, Katherine Beattie, Sofia A. Farinas, Samar N. Chehimi, Amrith Rodrigues, Lindsay L. Ejoh, Blake A. Kimmey, Emily Lo, Ghalia Azouz, Jose J. Vasquez, View ORCID ProfileMatthew R. Banghart, Kate Townsend Creasy, Kevin T. Beier, Charu Ramakrishnan, Richard C. Crist, Benjamin C. Reiner, Karl Deisseroth, Eric A. Yttri, Gregory Corder.

Journal:
bioRxiv
Publication Date:
Research Area:
cFos
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
CRO Services
The functional and anatomical characterization of three spinal output pathways of the anterolateral tract

Haichao Chen, Isabel H. Bleimeister, Eileen K. Nguyen, Jie Li, Abby Yilin Cui, Harrison J. Stratton, Kelly M. Smith, Mark L. Baccei, Sarah E. Ross.

Journal:
Cell Reports
Publication Date:
Research Area:
Neural Circuits, Mapping
Tissue Species:
Mouse
Tissue Type:
Spinal Cord
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
β-amyloid accumulation enhances microtubule associated protein tau pathology in an APPNL-G-F/MAPTP301S mouse model of Alzheimer’s disease

Lulu Jiang, Rebecca Roberts, Melissa Wong, Lushuang Zhang, Chelsea Joy Webber, Jenna Libera, Zihan Wang, Alper Kilci, Matthew Jenkins, Alejandro Rondón Ortiz, Luke Dorrian, Jingjing Sun, Guangxin Sun, Sherif Rashad, Caroline Kornbrek, Sarah Anne Daley, Peter C. Dedon, Brian Nguyen, Weiming Xia, Takashi Saito, Takaomi C. Saido, Benjamin Wolozin.

Journal:
Frontiers in Neuroscience
Publication Date:
Research Area:
Neurodegeneration
Tissue Species:
Mouse
Tissue Type:
Brain, Heart
Products Cited:
SHIELD, EasyIndex, SmartBatch+, SmartSPIM, CRO Services
Arteriolar degeneration and stiffness in cerebral amyloid angiopathy are linked to β-amyloid deposition and lysyl oxidase

Lissa Ventura-Antunes, Alex Nackenoff, Wilber Romero-Fernandez, Allison M Bosworth, Alex Prusky, Emmeline Wang, Cristian Carvajal-Tapia, Alena Shostak, Hannah Harmsen, Bret Mobley, Jose Maldonado, Elena Solopova, J. Caleb Snider, W. David Merryman, Ethan S Lippmann, Matthew Schrag.

Journal:
bioRxiv
Publication Date:
Research Area:
Neurodegeneration
Tissue Species:
Human
Tissue Type:
Brain
Products Cited:
SmartSPIM
MarShie: a clearing protocol for 3D analysis of single cells throughout the bone marrow at subcellular resolution

Till Fabian Mertens, Alina Tabea Liebheit, Johanna Ehl, Ralf Köhler, Asylkhan Rakhymzhan, Andrew Woehler, Lukas Katthän, Gernot Ebel, Wjatscheslaw Liublin, Ana Kasapi, Antigoni Triantafyllopoulou, Tim Julius Schulz, Raluca Aura Niesner & Anja Erika Hauser.

Journal:
Nature Communications
Publication Date:
Research Area:
Other
Tissue Species:
Mouse
Products Cited:
SHIELD, EasyIndex, SmartClear
Hippocampal Engrams Generate Variable Behavioral Responses and Brain-Wide Network States

Kaitlyn E. Dorst, Ryan A. Senne, Anh H. Diep, Antje R. de Boer, Rebecca L. Suthard, Heloise Leblanc, Evan A. Ruesch, Angela Y. Pyo, Sara Skelton, Lucas C. Carstensen, Samantha Malmberg, Olivia P. McKissick, John H. Bladon and Steve Ramirez.

Journal:
The Journal of Neuroscience
Publication Date:
Tissue Type:
Brain
Products Cited:
SHIELD, EasyIndex, SmartClear, SmartLabel, SmartSPIM, CRO Services
Adeno-associated virus delivered CXCL9 sensitizes glioblastoma to anti-PD-1 immune checkpoint blockade

Christina A. von Roemeling, Jeet A. Patel, Savannah L. Carpenter, Oleg Yegorov, Changlin Yang, Alisha Bhatia, Bently P. Doonan, Rylynn Russell, Vrunda S. Trivedi, Kelena Klippel, Daniel H. Ryu, Adam Grippin, Hunter S. Futch, Yong Ran, Lan B. Hoang-Minh, Frances L. Weidert, Todd E. Golde & Duane A. Mitchell

Journal:
Nature Communications
Publication Date:
Products Cited:
SmartBatch+, Passive Clearing Kit, SmartSPIM, CRO Services
Fluorescent Pdots Facilitate High-Resolution Mapping of the Intact Meningeal Vascular Network and Eye–Brain Connections

Yuqiao Li, Shuting Lu, Zhuang Zhang, Xiaoyan Li, Yankun Li, Xiaowei Li, Liqin Xiong

Journal:
ACS Nano
Publication Date:
Research Area:
Vasculature
Tissue Species:
Mouse
Tissue Type:
Brain
Products Cited:
MegaSPIM
Astrocyte Gi-GPCR signaling corrects compulsive-like grooming and anxiety-related behaviors in Sapap3 knockout mice

Joselyn S. Soto, Chiranjivi Neupane, Muskan Kaur, Vijaya Pandey, James A. Wohlschlegel, Baljit S. Khakh

Journal:
Neuron
Publication Date:
Research Area:
cFos
Tissue Species:
Mouse
Products Cited:
SHIELD, SmartSPIM, SmartAnalytics, CRO Services
Endothelial Neurogranin Regulates Blood–Brain Barrier Permeability via Modulation of the AKT Pathway

Adesewa O. Akande, Zachary A. Carter, Karen Y. Stokes & Hyung W. Nam

Journal:
Molecular Neurobiology
Publication Date:
Products Cited:
CRO Services

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